STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2830PFAM: SlyX family protein; KEGG: ajs:Ajs_3168 SlyX family protein. (85 aa)    
Predicted Functional Partners:
Daci_2829
PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_3169 putative transcriptional regulator, GntR family.
       0.783
Daci_2774
TIGRFAM: cytochrome oxidase maturation protein, cbb3-type; PFAM: cytochrome oxidase maturation protein cbb3-type; KEGG: ajs:Ajs_1083 cytochrome oxidase maturation protein, cbb3-type.
  
     0.585
Daci_5707
PFAM: Domain of unknown function DUF1854; KEGG: aav:Aave_3978 hypothetical protein.
  
     0.541
Daci_5463
PFAM: histidine triad (HIT) protein; KEGG: ajs:Ajs_0865 histidine triad (HIT) protein.
  
    0.512
Daci_2828
PFAM: conserved hypothetical protein; KEGG: reh:H16_B2308 probable extra-cytoplasmic solute receptor.
       0.486
Daci_4967
KEGG: ajs:Ajs_1199 membrane protein-like protein.
  
     0.461
Daci_0849
KEGG: aav:Aave_4656 hypothetical protein.
  
     0.450
Daci_2842
KEGG: tcx:Tcr_1006 hypothetical protein.
 
     0.442
Daci_5708
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_3979 ABC transporter-related protein.
  
     0.433
Daci_3669
KEGG: pol:Bpro_4259 putative lipoprotein.
  
     0.427
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.