Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_2847KEGG: ajs:Ajs_3158 hypothetical protein. (221 aa)    
Predicted Functional Partners:
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.826
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
  
     0.673
Daci_5063
KEGG: aav:Aave_1383 hypothetical protein.
  
     0.647
Daci_2846
KEGG: aav:Aave_1576 phosphoserine phosphatase SerB; TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; HAD-superfamily hydrolase subfamily IB hypothetical 1; Haloacid dehalogenase domain protein hydrolase type 3.
       0.642
Daci_3594
PFAM: CheW domain protein; KEGG: mpt:Mpe_A2970 hypothetical protein.
  
     0.602
Daci_0622
PFAM: Metal-dependent hydrolase HDOD; KEGG: ajs:Ajs_3839 putative signal transduction protein.
  
     0.599
Daci_0881
PFAM: Sporulation domain protein; KEGG: aav:Aave_4630 sporulation domain protein.
  
     0.587
Daci_0053
KEGG: ajs:Ajs_0032 methyltransferase type 12.
 
     0.579
Daci_4628
KEGG: aav:Aave_3317 hypothetical protein.
 
     0.558
Daci_5262
KEGG: aav:Aave_1195 putative transmembrane protein.
  
     0.554
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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