STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2853PFAM: protein of unknown function DUF541; KEGG: ajs:Ajs_3152 protein of unknown function DUF541. (289 aa)    
Predicted Functional Partners:
Daci_1839
KEGG: ajs:Ajs_3491 hypothetical protein.
  
     0.578
Daci_2852
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ajs:Ajs_3153 two component transcriptional regulator, winged helix family.
       0.561
Daci_5166
KEGG: ajs:Ajs_0971 putative transmembrane protein.
  
     0.547
Daci_4742
TIGRFAM: phasin family protein; PFAM: Phasin family protein; KEGG: vei:Veis_2554 phasin family protein.
  
     0.525
Daci_0710
KEGG: aav:Aave_0431 hypothetical protein.
   
    0.507
Daci_4591
PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_2544 protein of unknown function DUF1234.
  
     0.477
Daci_5588
PFAM: ResB family protein; KEGG: aav:Aave_0985 ResB family protein.
  
     0.475
Daci_2963
PFAM: protein of unknown function DUF107; KEGG: aav:Aave_3258 protein of unknown function DUF107.
  
    0.462
Daci_0050
PFAM: protein of unknown function DUF1234; KEGG: aav:Aave_0055 protein of unknown function DUF1234.
  
     0.442
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
  
     0.427
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.