STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2857KEGG: dge:Dgeo_0531 hypothetical protein. (57 aa)    
Predicted Functional Partners:
Daci_2858
KEGG: ade:Adeh_1212 hypothetical protein.
 
     0.913
Daci_3796
KEGG: reu:Reut_B5118 hypothetical protein.
  
     0.568
Daci_3794
KEGG: rme:Rmet_3764 hypothetical protein.
  
     0.536
Daci_2358
KEGG: bxe:Bxe_B0543 hypothetical protein.
  
     0.444
Daci_2359
KEGG: reu:Reut_A3203 hypothetical protein.
  
     0.424
Daci_4030
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: swi:Swit_1108 activator of HSP90 ATPase 1 family protein.
 
     0.419
Daci_2855
PFAM: alpha/beta hydrolase fold; KEGG: aav:Aave_1587 alpha/beta hydrolase fold.
       0.413
Daci_2856
(p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.413
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.