STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2865KEGG: aav:Aave_0970 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein. (421 aa)    
Predicted Functional Partners:
Daci_2864
TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aav:Aave_0969 dihydropyrimidinase.
 
 
 0.994
Daci_2862
TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: aav:Aave_0967 dihydroorotate dehydrogenase family protein.
 
 0.977
Daci_2861
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: aav:Aave_0966 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.932
Daci_0333
PFAM: Aldehyde Dehydrogenase; KEGG: pla:Plav_1859 aldehyde dehydrogenase.
    
 0.803
Daci_4882
PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1756 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
    
 0.803
Daci_0186
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0126 AMP-dependent synthetase and ligase.
   
 
  0.801
Daci_2771
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_1080 AMP-dependent synthetase and ligase.
   
 
  0.801
Daci_2863
TIGRFAM: NCS1 nucleoside transporter family; PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bur:Bcep18194_C6657 cytosine/purines, uracil, thiamine, allantoin transporter.
 
  
 0.797
Daci_2860
PFAM: regulatory protein TetR; Tetracycline transcriptional regulator YcdC domain protein; KEGG: vei:Veis_4153 transcriptional regulator, TetR family.
 
     0.478
argA
TIGRFAM: amino-acid N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; aspartate/glutamate/uridylate kinase; KEGG: ajs:Ajs_2327 amino-acid N-acetyltransferase; Belongs to the acetyltransferase family. ArgA subfamily.
  
  
 0.461
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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