Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2881KEGG: reh:H16_A0415 type IV pilus transmembrane protein FimT. (204 aa)    
Predicted Functional Partners:
Daci_2886
KEGG: pmy:Pmen_0957 Tfp pilus assembly protein PilE-like protein.
 
  
 0.898
Daci_2885
KEGG: xft:PD1611 fimbrial assembly protein.
 
  
 0.810
Daci_2882
TIGRFAM: type IV pilus modification protein PilV; KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV.
  
  
 0.791
Daci_2883
KEGG: pmy:Pmen_0960 Tfp pilus assembly protein PilW-like protein.
  
  
 0.778
Daci_5198
KEGG: ajs:Ajs_3189 fimbrial protein pilin.
 
  
 0.771
Daci_5192
KEGG: ajs:Ajs_3189 fimbrial protein pilin.
 
  
 0.745
Daci_2884
KEGG: psa:PST_0971 type 4 fimbrial biogenesis protein PilX.
 
  
 0.738
Daci_5579
PFAM: Pilus assembly protein PilO; KEGG: aav:Aave_0998 pilus assembly protein, PilO.
 
  
 0.720
Daci_5191
PFAM: FG-GAP repeat protein; KEGG: ajs:Ajs_3188 type 4 fimbrial biogenesis protein PilY1.
 
  
 0.694
Daci_5581
TIGRFAM: type IV pilus assembly protein PilM; KEGG: aav:Aave_0996 type IV pilus assembly protein PilM.
 
   
 0.688
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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