STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2882TIGRFAM: type IV pilus modification protein PilV; KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV. (181 aa)    
Predicted Functional Partners:
Daci_2881
KEGG: reh:H16_A0415 type IV pilus transmembrane protein FimT.
  
  
 0.794
Daci_2883
KEGG: pmy:Pmen_0960 Tfp pilus assembly protein PilW-like protein.
  
  
 0.721
Daci_5692
KEGG: vei:Veis_3524 hypothetical protein.
  
 
 0.700
Daci_2884
KEGG: psa:PST_0971 type 4 fimbrial biogenesis protein PilX.
     
 0.625
Daci_5080
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: vei:Veis_0403 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.592
Daci_2885
KEGG: xft:PD1611 fimbrial assembly protein.
  
  
 0.591
Daci_2886
KEGG: pmy:Pmen_0957 Tfp pilus assembly protein PilE-like protein.
     
 0.588
Daci_1299
General secretory pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.534
Daci_5395
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: aav:Aave_1068 type II secretion system protein E.
  
 
 0.534
Daci_5488
KEGG: aav:Aave_3680 type IV-A pilus assembly ATPase PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase.
  
 
 0.534
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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