STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2883KEGG: pmy:Pmen_0960 Tfp pilus assembly protein PilW-like protein. (264 aa)    
Predicted Functional Partners:
Daci_2884
KEGG: psa:PST_0971 type 4 fimbrial biogenesis protein PilX.
  
  
 0.816
Daci_2885
KEGG: xft:PD1611 fimbrial assembly protein.
  
  
 0.801
Daci_2886
KEGG: pmy:Pmen_0957 Tfp pilus assembly protein PilE-like protein.
  
  
 0.784
Daci_2881
KEGG: reh:H16_A0415 type IV pilus transmembrane protein FimT.
  
  
 0.777
Daci_2882
TIGRFAM: type IV pilus modification protein PilV; KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV.
  
  
 0.721
Daci_1302
TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_0685 general secretion pathway protein H.
  
  
 0.583
Daci_5188
TIGRFAM: type IV pilus modification protein PilV; KEGG: ajs:Ajs_3183 type IV pilus modification protein PilV.
  
  
 0.563
Daci_5194
TIGRFAM: type IV pilus modification protein PilV; KEGG: ajs:Ajs_3183 type IV pilus modification protein PilV.
  
  
 0.563
Daci_5191
PFAM: FG-GAP repeat protein; KEGG: ajs:Ajs_3188 type 4 fimbrial biogenesis protein PilY1.
  
  
 0.504
Daci_5197
PFAM: FG-GAP repeat protein; KEGG: ajs:Ajs_3188 type 4 fimbrial biogenesis protein PilY1.
  
  
 0.504
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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