STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2887PFAM: isochorismatase hydrolase; KEGG: pae:PA2419 probable hydrolase. (229 aa)    
Predicted Functional Partners:
Daci_2888
PFAM: isochorismatase hydrolase; KEGG: cko:CKO_02173 hypothetical protein.
 
    
0.784
Daci_2889
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmn:BMA10247_1774 transcriptional regulator, LysR family.
 
     0.731
Daci_1556
PFAM: Amidohydrolase 3; KEGG: cko:CKO_00430 hypothetical protein.
 
     0.674
Daci_5870
PFAM: glycosyl transferase family 20; KEGG: pna:Pnap_0524 alpha,alpha-trehalose-phosphate synthase (UDP-forming).
   
    0.499
Daci_3967
PFAM: isochorismatase hydrolase; KEGG: ajs:Ajs_2015 isochorismatase hydrolase.
  
     0.496
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
  
    0.487
Daci_2046
PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_2246 ThiJ/PfpI.
 
    0.481
Daci_3893
PFAM: OsmC family protein; KEGG: aav:Aave_0009 OsmC family protein.
  
    0.470
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: ajs:Ajs_3501 glycerol-3-phosphate dehydrogenase (NAD(P)(+)); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.441
Daci_3946
PFAM: Pirin domain protein; KEGG: bte:BTH_I1747 pirin family protein; Belongs to the pirin family.
 
  
 0.430
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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