STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2887PFAM: isochorismatase hydrolase; KEGG: pae:PA2419 probable hydrolase. (229 aa)    
Predicted Functional Partners:
Daci_2888
PFAM: isochorismatase hydrolase; KEGG: cko:CKO_02173 hypothetical protein.
 
    
0.784
Daci_2889
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmn:BMA10247_1774 transcriptional regulator, LysR family.
 
     0.732
Daci_1556
PFAM: Amidohydrolase 3; KEGG: cko:CKO_00430 hypothetical protein.
 
   
 0.685
Daci_3967
PFAM: isochorismatase hydrolase; KEGG: ajs:Ajs_2015 isochorismatase hydrolase.
  
     0.496
Daci_2046
PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl_2246 ThiJ/PfpI.
 
   0.486
Daci_3946
PFAM: Pirin domain protein; KEGG: bte:BTH_I1747 pirin family protein; Belongs to the pirin family.
 
  
 0.424
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
  
    0.421
Daci_4268
PFAM: Catalase domain protein; KEGG: ajs:Ajs_1958 catalase.
  
   0.417
Daci_4342
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
   0.417
Daci_1557
PFAM: protein of unknown function DUF1427; KEGG: pau:PA14_29250 hypothetical protein.
 
    0.415
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.