Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2890PFAM: protein of unknown function DUF461; KEGG: rfr:Rfer_0618 protein of unknown function DUF461. (166 aa)    
Predicted Functional Partners:
Daci_1674
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.855
Daci_2893
KEGG: mxa:MXAN_0976 putative lipoprotein.
       0.781
Daci_2892
PFAM: Di-haem cytochrome c peroxidase; KEGG: lil:LA2974 methylamine utilization protein mauG.
       0.778
Daci_2891
KEGG: dar:Daro_0198 hypothetical protein.
       0.773
Daci_1683
PFAM: electron transport protein SCO1/SenC; KEGG: aav:Aave_3898 electron transport protein SCO1/SenC.
 
   
 0.732
Daci_2687
KEGG: pst:PSPTO_2851 SCO1/SenC family protein.
 
   
 0.731
Daci_1998
Electron transport protein SCO1/SenC; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; electron transport protein SCO1/SenC; KEGG: mpt:Mpe_A3172 putative lipoprotein.
 
   
 0.727
Daci_5502
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.696
Daci_5503
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.678
Daci_2895
PFAM: protein of unknown function DUF461; KEGG: ajs:Ajs_3343 protein of unknown function DUF461.
 
    
0.674
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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