Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2891KEGG: dar:Daro_0198 hypothetical protein. (412 aa)    
Predicted Functional Partners:
Daci_2893
KEGG: mxa:MXAN_0976 putative lipoprotein.
       0.792
Daci_2892
PFAM: Di-haem cytochrome c peroxidase; KEGG: lil:LA2974 methylamine utilization protein mauG.
       0.790
Daci_2890
PFAM: protein of unknown function DUF461; KEGG: rfr:Rfer_0618 protein of unknown function DUF461.
       0.773
Daci_2894
Hypothetical protein.
       0.603
Daci_2895
PFAM: protein of unknown function DUF461; KEGG: ajs:Ajs_3343 protein of unknown function DUF461.
       0.599
Daci_2896
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4448 TonB-dependent receptor.
       0.432
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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