Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2901KEGG: aav:Aave_1797 peptidase M14, carboxypeptidase A. (585 aa)    
Predicted Functional Partners:
Daci_2477
KEGG: pna:Pnap_1325 phosphoesterase, DHHA1.
  
     0.755
Daci_0719
PFAM: sodium/hydrogen exchanger; KEGG: aav:Aave_0435 sodium/hydrogen exchanger.
  
  
 0.743
Daci_2918
PFAM: Mammalian cell entry related domain protein; KEGG: aav:Aave_1818 mammalian cell entry related domain protein.
  
     0.729
Daci_2519
KEGG: aav:Aave_3010 hypothetical protein.
  
     0.639
Daci_0413
KEGG: ajs:Ajs_0301 putative ATP synthase protein I.
  
     0.617
rhlE
DEAD/DEAH box helicase domain protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
   
   0.549
Daci_0753
PFAM: Chorismate mutase; KEGG: aav:Aave_0443 chorismate mutase.
  
     0.521
Daci_0934
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: aav:Aave_4577 histidine kinase.
  
     0.519
Daci_3970
KEGG: aav:Aave_2832 hypothetical protein.
  
     0.511
Daci_4870
KEGG: ajs:Ajs_1766 putative transmembrane protein.
  
     0.504
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: medium (42%) [HD]