STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2909PFAM: blue (type 1) copper domain protein; KEGG: ajs:Ajs_2601 blue (type 1) copper domain protein. (163 aa)    
Predicted Functional Partners:
Daci_2910
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ajs:Ajs_2600 multicopper oxidase, type 3.
 
  
 0.971
Daci_2911
KEGG: ajs:Ajs_2599 copper tolerance protein.
 
     0.945
Daci_2907
KEGG: ajs:Ajs_2603 hypothetical protein.
 
     0.931
Daci_2908
PFAM: protein of unknown function DUF411; KEGG: ajs:Ajs_2602 protein of unknown function DUF411.
 
  
 0.887
Daci_0449
PFAM: copper resistance B precursor; KEGG: ajs:Ajs_1234 copper resistance B precursor.
  
  
 0.767
Daci_2912
KEGG: ajs:Ajs_2598 hypothetical protein.
       0.730
Daci_0450
TIGRFAM: copper-resistance protein, CopA family; PFAM: multicopper oxidase type 1; multicopper oxidase type 2; multicopper oxidase type 3; KEGG: ajs:Ajs_1235 copper-resistance protein, CopA family.
 
  
 0.677
Daci_2906
PFAM: peptidase S58 DmpA; KEGG: ajs:Ajs_2605 peptidase S58, DmpA.
       0.622
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
     
 0.619
Daci_3373
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; KEGG: art:Arth_4421 multicopper oxidase, type 3.
  
  
 0.572
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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