Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2927PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_A4571 xylose isomerase-like TIM barrel. (307 aa)    
Predicted Functional Partners:
Daci_2926
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rso:RSc1245 putative protein implicated in myo-inositol catabolique pathway.
 
    0.971
iolG
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
  
 0.953
Daci_2931
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rso:RSc1239 putative acetolactate synthase protein; Belongs to the TPP enzyme family.
 
  
 0.930
Daci_0984
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: vei:Veis_0068 myo-inositol catabolism IolB domain protein.
 
  
 0.917
Daci_0985
PFAM: PfkB domain protein; KEGG: rso:RSc1240 probable transferase kinase protein.
 
  
 0.900
Daci_2932
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bvi:Bcep1808_1385 xylose isomerase domain protein TIM barrel.
 
  
 0.894
Daci_2924
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rso:RSc1248 hypothetical protein.
 
  
 0.888
Daci_2928
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: rso:RSc1243 probable sugar transmembrane ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.778
Daci_2930
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rso:RSc1241 putative rhizopine-binding precursor signal peptide protein.
 
    0.768
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
    0.639
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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