Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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textmining
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2937PFAM: AMP-dependent synthetase and ligase; KEGG: bbr:BB4380 putative D-alanine-D-alanyl carrier protein ligase. (494 aa)    
Predicted Functional Partners:
Daci_4755
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: aav:Aave_3732 beta-ketoacyl synthase.
 0.990
Daci_2938
PFAM: phosphopantetheine-binding; KEGG: bpa:BPP3911 acyl carrier protein.
  
 0.978
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.906
ddl
D-alanine--D-alanine ligase; Cell wall formation.
     
 0.901
Daci_2939
PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: aba:Acid345_4412 membrane bound O-acyl transferase, MBOAT; Belongs to the membrane-bound acyltransferase family.
 
     0.831
Daci_2936
KEGG: xau:Xaut_1752 cell morphology protein.
       0.783
Daci_2940
KEGG: xau:Xaut_1750 cell morphology protein.
 
     0.730
Daci_2941
KEGG: xau:Xaut_1749 hypothetical protein.
 
     0.714
Daci_2935
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain protein.
  
    0.706
hemL
TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: ajs:Ajs_3581 glutamate-1-semialdehyde-2,1-aminomutase.
 
  
 0.697
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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