STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2943KEGG: mms:mma_2623 bacteriophage N4 adsorption protein B. (573 aa)    
Predicted Functional Partners:
Daci_2942
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: mms:mma_2622 hypothetical protein.
 
  
 0.964
Daci_2941
KEGG: xau:Xaut_1749 hypothetical protein.
 
  
 0.921
Daci_2940
KEGG: xau:Xaut_1750 cell morphology protein.
 
  
 0.919
Daci_2944
KEGG: psp:PSPPH_1082 hypothetical protein.
 
     0.885
Daci_2939
PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: aba:Acid345_4412 membrane bound O-acyl transferase, MBOAT; Belongs to the membrane-bound acyltransferase family.
 
 
 0.820
Daci_2948
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cbe:Cbei_2655 TPR repeat-containing protein.
  
 
 0.744
Daci_4219
KEGG: sma:SAV3034 hypothetical protein.
  
 
 0.744
Daci_2945
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mms:mma_2625 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
   
 0.698
Daci_1508
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.695
Daci_3589
KEGG: ajs:Ajs_2088 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.657
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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