STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2950Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2533 transcriptional regulator, LysR family. (336 aa)    
Predicted Functional Partners:
Daci_2949
PFAM: major facilitator superfamily MFS_1; KEGG: aav:Aave_2534 major facilitator superfamily MFS_1.
 
     0.678
Daci_2045
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: afw:Anae109_2895 transcriptional regulator, LysR family.
  
     0.633
Daci_3355
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: rme:Rmet_1175 transcriptional regulator, LysR family.
  
     0.555
Daci_0733
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pol:Bpro_1453 transcriptional regulator, LysR family.
  
     0.516
Daci_2951
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rso:RS00872 probable extracytoplasmic function sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily.
       0.501
Daci_2952
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: pau:PA14_46650 putative transmembrane sensor.
       0.501
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.