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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2971KEGG: asa:ASA_3720 hypothetical protein. (170 aa)    
Predicted Functional Partners:
Daci_2969
PFAM: zinc/iron permease; KEGG: aav:Aave_2663 zinc/iron permease.
  
    0.845
Daci_2970
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.749
Daci_0118
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: oan:Oant_1901 siderophore-interacting protein.
   
    0.527
Daci_0313
PFAM: Siderophore-interacting protein; FAD-binding 9 siderophore-interacting domain protein; KEGG: reh:H16_B1184 siderophore-interacting protein.
   
    0.527
Daci_1709
KEGG: nha:Nham_4496 hypothetical protein.
  
    0.524
Daci_5323
PFAM: zinc/iron permease; KEGG: aav:Aave_1944 zinc/iron permease.
  
    0.524
Daci_2972
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ajs:Ajs_1809 short-chain dehydrogenase/reductase SDR.
       0.437
Daci_3574
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
    0.413
Daci_1437
PFAM: fumarate lyase; KEGG: vei:Veis_4596 fumarate lyase.
  
    0.406
fumC
Fumarate hydratase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
    0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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