STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_2985KEGG: aav:Aave_3388 cytochrome c553-like protein. (281 aa)    
Predicted Functional Partners:
Daci_2986
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: aav:Aave_3387 cytochrome c, class I.
  
 0.958
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
   
 
 0.787
Daci_5501
PFAM: cytochrome c1; KEGG: aav:Aave_3694 cytochrome c1.
 
  
 0.785
Daci_5503
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.711
Daci_5502
Cytochrome b/b6 domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.673
Daci_4236
PFAM: cytochrome c class I; KEGG: bur:Bcep18194_B0408 cytochrome c, class I.
 
  
 0.622
Daci_0498
PFAM: cytochrome c class I; KEGG: aav:Aave_0385 cytochrome c, class I.
 
   
 0.619
Daci_2984
PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: ajs:Ajs_0639 heat shock protein DnaJ domain protein.
   
 
 0.566
Daci_2776
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: ajs:Ajs_1085 cytochrome c oxidase, cbb3-type, subunit II.
  
 
 0.548
Daci_3929
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: spe:Spro_2490 gluconate 2-dehydrogenase (acceptor).
  
 0.546
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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