Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_2987PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Daci_0587
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: aav:Aave_4456 cytochrome c biogenesis protein, transmembrane region.
  
 
 0.834
Daci_2986
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: aav:Aave_3387 cytochrome c, class I.
   
 
 0.785
Daci_2985
KEGG: aav:Aave_3388 cytochrome c553-like protein.
   
 
 0.780
Daci_5681
KEGG: aav:Aave_0933 porin, gram-negative type.
  
     0.761
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
    0.760
Daci_2920
PFAM: porin Gram-negative type; KEGG: aav:Aave_1125 porin, gram-negative type.
  
     0.746
Daci_2423
KEGG: aav:Aave_2200 protein of unknown function DUF339.
  
     0.742
Daci_5627
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.741
Daci_3809
PFAM: porin Gram-negative type; KEGG: reh:H16_A0625 outer membrane protein (porin).
  
     0.730
Daci_2984
PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; KEGG: ajs:Ajs_0639 heat shock protein DnaJ domain protein.
   
 0.728
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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