STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3024PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: rha:RHA1_ro01782 probable 4-hydroxyphenylacetic hydroxylase. (504 aa)    
Predicted Functional Partners:
Daci_3023
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB4796 LysR-family transcriptional regulator.
 
     0.869
Daci_3025
PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_3336 extracellular ligand-binding receptor.
 
     0.804
Daci_3032
PFAM: protein of unknown function DUF1028; KEGG: bxe:Bxe_A3464 hypothetical protein.
 
     0.731
Daci_3031
PFAM: Endoribonuclease L-PSP; KEGG: pap:PSPA7_6178 hypothetical protein.
 
     0.708
Daci_3030
KEGG: pap:PSPA7_6179 hypothetical protein.
 
   
 0.621
trpE
Anthranilate synthase component I; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...]
      
 0.502
Daci_3028
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG.
 
     0.502
Daci_3027
PFAM: inner-membrane translocator; KEGG: maq:Maqu_3337 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
     0.499
Daci_2171
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: mpt:Mpe_A3682 aspartate transaminase.
      
 0.476
Daci_4002
Aspartate transaminase; PFAM: aminotransferase class I and II; KEGG: ajs:Ajs_2151 aspartate transaminase.
      
 0.476
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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