Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3025PFAM: Extracellular ligand-binding receptor; KEGG: pol:Bpro_3336 extracellular ligand-binding receptor. (382 aa)    
Predicted Functional Partners:
Daci_3027
PFAM: inner-membrane translocator; KEGG: maq:Maqu_3337 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.991
Daci_3026
PFAM: inner-membrane translocator; KEGG: pol:Bpro_3335 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.990
Daci_3028
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tth:TTC0969 branched-chain amino acid transport ATP-binding protein livG.
 
  
 0.901
Daci_3029
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tma:TM1139 branched-chain amino acid transport system ATP-binding protein.
 
  
 0.887
Daci_5353
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3363 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.859
Daci_0261
PFAM: inner-membrane translocator; KEGG: reh:H16_B2038 ABC-type transporter, permease component: HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.853
Daci_4333
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3255 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.850
Daci_5354
PFAM: inner-membrane translocator; KEGG: aav:Aave_1875 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.848
Daci_4332
PFAM: inner-membrane translocator; KEGG: ajs:Ajs_3254 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.847
Daci_0260
PFAM: inner-membrane translocator; KEGG: reh:H16_B2037 ABC-type transporter, permease component: HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.844
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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