Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3032PFAM: protein of unknown function DUF1028; KEGG: bxe:Bxe_A3464 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Daci_3031
PFAM: Endoribonuclease L-PSP; KEGG: pap:PSPA7_6178 hypothetical protein.
 
     0.923
Daci_3030
KEGG: pap:PSPA7_6179 hypothetical protein.
 
     0.884
Daci_3023
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB4796 LysR-family transcriptional regulator.
 
     0.810
Daci_3024
PFAM: 4-hydroxyphenylacetate 3-hydroxylase; KEGG: rha:RHA1_ro01782 probable 4-hydroxyphenylacetic hydroxylase.
 
     0.749
Daci_0144
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A0487 transcriptional regulator, LysR-family.
  
     0.704
Daci_1850
KEGG: aav:Aave_3930 hypothetical protein.
  
     0.454
Daci_1859
PFAM: regulatory protein MarR; KEGG: aav:Aave_3922 transcriptional regulator, MarR family.
  
     0.419
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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