Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3035PFAM: major facilitator superfamily MFS_1; KEGG: spc:Sputcn32_1816 major facilitator superfamily MFS_1. (390 aa)    
Predicted Functional Partners:
Daci_3034
PFAM: beta-lactamase; KEGG: reh:H16_A1195 beta-lactamase.
 
   
 0.818
Daci_3033
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A1196 transcriptional regulator, LysR-family.
 
     0.681
Daci_3925
PFAM: alpha/beta hydrolase fold; KEGG: bur:Bcep18194_B3091 alpha/beta hydrolase.
    0.515
Daci_1122
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reh:H16_B1200 putative MFS transporter.
  
   
 0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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