Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3039KEGG: aav:Aave_2928 hypothetical protein. (193 aa)    
Predicted Functional Partners:
Daci_3038
KEGG: aav:Aave_2927 putative lipoprotein.
 
   0.971
Daci_3040
PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aav:Aave_2929 serine phosphatase.
 
  
 0.961
Daci_1585
KEGG: rme:Rmet_2261 putative lipoprotein.
 
   0.935
Daci_1587
Protein serine/threonine phosphatase; PFAM: Stage II sporulation E family protein; KEGG: rme:Rmet_2259 serine phosphatase.
 
  
 0.831
Daci_3037
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_2926 diguanylate cyclase.
  
    0.631
Daci_3036
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG: aav:Aave_2925 response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
    0.537
Daci_3041
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: bur:Bcep18194_B2065 taurine dioxygenase.
       0.525
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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