Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3049PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane. (504 aa)    
Predicted Functional Partners:
Daci_3051
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5629 uncharacterized protein UPF0065.
 
    0.942
Daci_3050
KEGG: mms:mma_0439 small permease component of tripartite tricarboxylate transporter.
 
  
 0.920
Daci_2520
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane.
  
  
 
0.913
Daci_5393
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane.
  
  
 
0.913
Daci_0285
KEGG: ppf:Pput_3076 hypothetical protein.
     
  0.900
Daci_0982
PFAM: conserved hypothetical protein; KEGG: reh:H16_B1814 probable extra-cytoplasmic solute receptor.
 
    0.822
Daci_0906
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_4203 uncharacterized protein UPF0065.
 
    0.819
Daci_2518
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1642 uncharacterized protein UPF0065.
 
    0.819
Daci_4565
PFAM: conserved hypothetical protein; KEGG: bbr:BB2684 putative lipoprotein.
 
    0.819
Daci_5298
PFAM: conserved hypothetical protein; KEGG: vei:Veis_4798 uncharacterized protein UPF0065.
 
    0.818
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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