STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3060PFAM: Radical SAM domain protein; KEGG: rpc:RPC_3241 radical SAM. (339 aa)    
Predicted Functional Partners:
Daci_3059
PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; KEGG: nmc:NMC0891 hypothetical protein.
       0.783
Daci_3058
KEGG: rbe:RBE_0376 hypothetical protein.
       0.687
Daci_3057
PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase; KEGG: xom:XOO_1681 colicin V secretion ABC transporter ATP-binding protein.
  
    0.682
Daci_3115
Cerebroside-sulfatase; PFAM: sulfatase; KEGG: bbr:BB1025 probable sulfatase.
  
 
 0.634
Daci_0296
PFAM: sulfatase; KEGG: aav:Aave_4466 sulfatase.
  
 
 0.606
Daci_5404
PFAM: sulfatase; KEGG: vei:Veis_2294 sulfatase.
  
 
 0.606
Daci_3056
Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.
       0.586
Daci_3061
PFAM: secretion protein HlyD family protein; KEGG: mpt:Mpe_A3794 membrane-fusion protein.
  
    0.426
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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