STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3063PFAM: transglutaminase domain protein; KEGG: aav:Aave_3990 transglutaminase domain protein. (367 aa)    
Predicted Functional Partners:
Daci_5079
PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: aav:Aave_1353 protein of unknown function DUF404.
 
  
 0.844
Daci_5078
PFAM: protein of unknown function DUF403; KEGG: aav:Aave_1354 protein of unknown function DUF403.
 
  
 0.839
Daci_2273
Proteasome-type protease-like protein; KEGG: aav:Aave_2046 20S proteasome, A and B subunits.
 
    0.779
Daci_1804
KEGG: aav:Aave_3868 hypothetical protein.
 
     0.625
Daci_3062
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: pol:Bpro_2754 transcriptional regulator, GntR family.
       0.553
Daci_2385
PFAM: protein of unknown function DUF58; KEGG: ajs:Ajs_2815 protein of unknown function DUF58.
 
  
 0.447
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.