STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3065KEGG: ret:RHE_CH02944 hypothetical protein. (241 aa)    
Predicted Functional Partners:
Daci_2223
PFAM: Negative transcriptional regulator; KEGG: aav:Aave_4171 FMN-binding negative transcriptional regulator.
  
  
 0.744
Daci_3066
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rme:Rmet_0007 transcriptional regulator, AraC family.
 
     0.714
Daci_3067
TIGRFAM: chromate transporter, chromate ion transporter (CHR) family; PFAM: Chromate transporter; KEGG: mpt:Mpe_A2526 CHR transporter.
       0.614
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: aav:Aave_1204 lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
      0.603
Daci_2837
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: ajs:Ajs_3161 lysine exporter protein (LysE/YggA).
  
    0.457
Daci_3160
Hypothetical protein; KEGG: bch:Bcen2424_0934 lysine exporter protein (LysE/YggA).
  
    0.457
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.434
Daci_3069
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; Redoxin domain protein; KEGG: bch:Bcen2424_6244 cytochrome c biogenesis protein, transmembrane region.
       0.402
Daci_3064
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_1367 TonB-dependent siderophore receptor.
       0.401
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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