STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3075PFAM: PepSY-associated TM helix domain protein; KEGG: reh:H16_B1677 iron regulated protein. (557 aa)    
Predicted Functional Partners:
Daci_3076
KEGG: sbm:Shew185_4236 hypothetical protein.
       0.783
Daci_3074
KEGG: reh:H16_B1678 hypothetical protein.
       0.735
Daci_3276
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: azo:azo2994 probable TonB-dependent receptor.
 
  
 0.642
Daci_1171
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: pfl:PFL_3315 outer membrane ferripyoverdine receptor.
 
  
 0.616
Daci_1449
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: psp:PSPPH_1870 outer membrane ferripyoverdine receptor.
 
  
 0.608
Daci_3531
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bbr:BB3900 ferric alcaligin siderophore receptor.
 
  
 0.606
Daci_0273
KEGG: rpc:RPC_2857 hypothetical protein.
 
    0.592
Daci_1879
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; Secretin/TonB short domain; TonB-dependent receptor plug; KEGG: mms:mma_1159 outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
  
 0.556
Daci_3279
KEGG: rsh:Rsph17029_3599 hypothetical protein.
 
    0.550
Daci_0140
KEGG: xcb:XC_1336 hypothetical protein.
 
    0.547
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.