STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3079PFAM: EAL domain protein; response regulator receiver; KEGG: pfl:PFL_3636 response regulator/EAL domain protein. (403 aa)    
Predicted Functional Partners:
Daci_3080
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3637 sensor histidine kinase/response regulator.
 
 0.953
Daci_3483
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: pau:PA14_49890 hypothetical protein.
 
 0.924
Daci_3078
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3635 sensor histidine kinase/response regulator.
 
 0.899
Daci_1599
Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: aha:AHA_2752 GGDEF domain protein.
 
 0.898
Daci_1508
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 0.859
Daci_2366
Histidine kinase; KEGG: pap:PSPA7_4410 virulence sensor protein BvgS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3.
 
 0.858
Daci_5124
Diguanylate cyclase with PAS/PAC sensor; KEGG: azo:azo0498 GGDEF/PAS/PAC-domain containing protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.850
Daci_1999
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: bja:blr0364 hypothetical protein.
 
 0.845
Daci_0645
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: ajs:Ajs_3800 flagellar motor switch protein FliM.
  
  
 0.844
Daci_0604
PFAM: MotA/TolQ/ExbB proton channel; KEGG: ajs:Ajs_3815 MotA/TolQ/ExbB proton channel.
  
  
 0.842
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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