Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_3105Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: eca:ECA2036 regulatory protein. (180 aa)    
Predicted Functional Partners:
Daci_3106
PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA2035 regulatory protein.
 
   
 0.892
Daci_3655
PFAM: regulatory protein MarR; KEGG: mxa:MXAN_1760 transcriptional regulator, MarR family.
  
     0.477
Daci_3107
PFAM: nitroreductase; KEGG: hch:HCH_03586 nitroreductase.
  
  
 0.476
Daci_3109
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: pfl:PFL_3630 hypothetical protein.
 
   
 0.457
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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