STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3106PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA2035 regulatory protein. (299 aa)    
Predicted Functional Partners:
Daci_3105
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: eca:ECA2036 regulatory protein.
 
   
 0.893
Daci_3107
PFAM: nitroreductase; KEGG: hch:HCH_03586 nitroreductase.
       0.637
Daci_3109
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: pfl:PFL_3630 hypothetical protein.
 
     0.567
Daci_3108
PFAM: bifunctional deaminase-reductase domain protein; KEGG: pfl:PFL_3631 RibD C-terminal domain.
  
    0.468
Daci_3915
PFAM: protein of unknown function DUF6 transmembrane; KEGG: rso:RSc0614 hypothetical protein.
  
     0.413
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.