STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3107PFAM: nitroreductase; KEGG: hch:HCH_03586 nitroreductase. (211 aa)    
Predicted Functional Partners:
Daci_3106
PFAM: protein of unknown function DUF6 transmembrane; KEGG: eca:ECA2035 regulatory protein.
       0.637
Daci_3108
PFAM: bifunctional deaminase-reductase domain protein; KEGG: pfl:PFL_3631 RibD C-terminal domain.
     
 0.575
Daci_3109
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: pfl:PFL_3630 hypothetical protein.
     
 0.565
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
      
 0.530
Daci_4368
PFAM: protein of unknown function DUF181; KEGG: aav:Aave_3061 protein of unknown function DUF181.
  
  
 0.524
Daci_0759
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: ajs:Ajs_2361 ABC transporter related.
  
  
 0.497
Daci_3105
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; KEGG: eca:ECA2036 regulatory protein.
  
    0.478
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.426
Daci_0758
PFAM: ABC-2 type transporter; KEGG: pla:Plav_3447 ABC-2 type transporter.
  
  
 0.407
Daci_4569
KEGG: prw:PsycPRwf_0651 ABC-2 type transporter.
  
  
 0.407
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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