Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3113KEGG: azo:azo2218 putative cobalt transport system, periplasmic-binding protein. (238 aa)    
Predicted Functional Partners:
Daci_3112
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: azo:azo2217 putative TonB-dependent receptor.
 
  
 0.796
Daci_3111
Putative transcriptional regulator, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
       0.552
Daci_5056
KEGG: mpt:Mpe_A3729 hypothetical protein.
  
  
 0.548
Daci_1525
KEGG: aav:Aave_1925 putative iron-regulated protein.
   
    0.508
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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