STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3115Cerebroside-sulfatase; PFAM: sulfatase; KEGG: bbr:BB1025 probable sulfatase. (440 aa)    
Predicted Functional Partners:
Daci_3114
PFAM: conserved hypothetical protein; KEGG: vei:Veis_1031 uncharacterized protein UPF0065.
       0.780
Daci_3060
PFAM: Radical SAM domain protein; KEGG: rpc:RPC_3241 radical SAM.
  
 
 0.634
Daci_4834
PFAM: protein of unknown function DUF323; KEGG: aav:Aave_3090 protein of unknown function DUF323.
  
   0.554
Daci_3116
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1024 LysR-family transcriptional regulator.
       0.524
Daci_0774
PFAM: beta-lactamase domain protein; KEGG: rme:Rmet_2149 beta-lactamase-like protein.
 
   
 0.437
Daci_1374
PFAM: protein of unknown function DUF1214; protein of unknown function DUF1254; KEGG: reu:Reut_B3898 protein of unknown function DUF1214:protein of unknown function DUF1254.
 
     0.430
Daci_5597
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: vei:Veis_2571 SMP-30/gluconolaconase/LRE domain protein.
 
  
 0.413
Daci_1225
PFAM: PhoH family protein; KEGG: aav:Aave_4241 PhoH family protein.
   
  
 0.408
Daci_4552
KEGG: pol:Bpro_3874 putative hemagglutinin-related protein.
  
     0.407
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.