STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3133TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: pol:Bpro_0540 hypothetical protein. (104 aa)    
Predicted Functional Partners:
Daci_3135
KEGG: mms:mma_3541 thiosulfate reductase cytochrome b subunit (membrane anchoring protein).
 
     0.886
Daci_3134
PFAM: oxidoreductase molybdopterin binding; KEGG: dar:Daro_2592 oxidoreductase, molybdopterin binding.
 
     0.854
Daci_2221
KEGG: pap:PSPA7_1712 hypothetical protein.
  
     0.555
Daci_0029
PFAM: Extracellular ligand-binding receptor; KEGG: rfr:Rfer_4065 extracellular ligand-binding receptor.
  
    0.482
Daci_4365
PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase.
  
  
 0.448
Daci_3589
KEGG: ajs:Ajs_2088 diguanylate cyclase/phosphodiesterase with PAS/PAC and CHASE sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 0.423
Daci_1256
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; Diverse 7TM receptor extracellular region 2; KEGG: bur:Bcep18194_B1562 periplasmic sensor signal transduction histidine kinase.
  
   
 0.416
Daci_1508
KEGG: mgm:Mmc1_3409 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.412
Daci_3136
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2495 transcriptional regulator, LysR-family.
       0.401
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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