STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3135KEGG: mms:mma_3541 thiosulfate reductase cytochrome b subunit (membrane anchoring protein). (217 aa)    
Predicted Functional Partners:
Daci_3134
PFAM: oxidoreductase molybdopterin binding; KEGG: dar:Daro_2592 oxidoreductase, molybdopterin binding.
 
  
 0.952
Daci_3133
TIGRFAM: pentapeptide MXKDX repeat protein; KEGG: pol:Bpro_0540 hypothetical protein.
 
     0.884
Daci_3136
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B2495 transcriptional regulator, LysR-family.
       0.576
Daci_4561
PFAM: 4-oxalocrotonate tautomerase; KEGG: pol:Bpro_0509 4-oxalocrotonate tautomerase.
  
     0.452
Daci_3137
PFAM: pyruvate carboxyltransferase; KEGG: bam:Bamb_6280 pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.414
Daci_3138
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: reh:H16_B2493 predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
       0.414
Daci_3072
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5784 periplasmic sensor signal transduction histidine kinase.
 
     0.405
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.