STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3148PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pau:PA14_10190 putative transcriptional regulator. (263 aa)    
Predicted Functional Partners:
Daci_5727
PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: reh:H16_B1758 allophanate hydrolase.
  
    0.824
Daci_3147
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pau:PA14_10200 putative TonB-dependent receptor protein.
 
     0.780
Daci_3146
KEGG: pfl:PFL_3619 monooxygenase, NtaA/SnaA/SoxA family.
 
     0.653
Daci_0043
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bpe:BP2655 putative IclR-family regulatory protein.
  
     0.512
Daci_1756
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: reu:Reut_B4595 regulatory protein, IclR.
  
     0.455
Daci_4359
Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_2991 transcriptional regulator, IclR family.
  
     0.431
Daci_2968
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_4515 transcriptional regulator, IclR family.
  
     0.419
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.