STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3154Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: sgl:SG0777 hypothetical protein. (102 aa)    
Predicted Functional Partners:
Daci_3153
KEGG: rso:RSc1866 hypothetical protein.
       0.527
Daci_2483
PFAM: protein of unknown function DUF306 Meta and HslJ; KEGG: pen:PSEEN3175 hypothetical protein.
  
     0.451
Daci_2437
KEGG: eba:ebA2161 hypothetical protein.
 
 
 
 0.439
Daci_5793
PFAM: Fimbrial protein; KEGG: rme:Rmet_2545 fimbrial protein.
  
     0.429
Daci_0124
PFAM: Fimbrial protein; KEGG: kpn:KPN_03276 putative fimbrial-like protein.
  
     0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.