Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3155PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sun:SUN_2434 5-methylcytosine-specific restriction enzyme A. (330 aa)    
Predicted Functional Partners:
Daci_1929
PFAM: peptidase S24 and S26 domain protein; KEGG: aav:Aave_1607 putative prophage repressor.
  
    0.698
Daci_3156
KEGG: rme:Rmet_3347 hypothetical protein.
       0.450
Daci_1927
PFAM: protein of unknown function DUF1508; KEGG: pfo:Pfl_1378 duplicated hypothetical protein.
  
     0.415
Daci_3461
PFAM: integrase family protein; KEGG: ajs:Ajs_3340 phage integrase family protein.
 
     0.403
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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