STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3167PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hne:HNE_0595 oxidoreductase, short chain dehydrogenase/reductase family protein. (301 aa)    
Predicted Functional Partners:
Daci_3166
PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A3057 AMP-dependent synthetase and ligase.
 
   0.816
Daci_3165
PFAM: conserved hypothetical protein; KEGG: reh:H16_A3350 probable extra-cytoplasmic solute receptor.
       0.668
Daci_0042
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_1570 short-chain dehydrogenase/reductase SDR.
  
     0.643
Daci_2470
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_2522 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.639
Daci_3340
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_1396 short-chain dehydrogenase/reductase SDR.
  
     0.615
Daci_3602
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: aav:Aave_2479 acetoacetyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.593
Daci_2044
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rso:RSc2321 probable dehydrogenase/reductase oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.537
Daci_1790
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_A3487 putative short chain dehydrogenase.
  
     0.523
Daci_5357
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rme:Rmet_4197 short-chain dehydrogenase/reductase SDR.
 
 
 
 0.523
Daci_0195
3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase; PFAM: MaoC domain protein dehydratase; KEGG: ajs:Ajs_0121 MaoC domain protein dehydratase.
 
 0.431
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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