STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3176KEGG: ajs:Ajs_2343 hypothetical protein. (366 aa)    
Predicted Functional Partners:
Daci_3174
TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: ajs:Ajs_2342 lipoprotein, YaeC family; Belongs to the nlpA lipoprotein family.
  
    0.774
mtnD
Acireductone dioxygenase ARD; Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.
       0.773
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.640
tuf-2
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.640
Daci_2477
KEGG: pna:Pnap_1325 phosphoesterase, DHHA1.
  
     0.576
metN-2
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
       0.554
Daci_3173
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_2344 binding-protein-dependent transport systems inner membrane component.
       0.554
Daci_2095
KEGG: har:HEAR2597 putative membrane protein; putative 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
  
     0.540
Daci_1915
PFAM: Exonuclease, phage-type; KEGG: har:HEAR2308 unknown prophage (lambda); putative exonuclease.
  
     0.497
Daci_2381
KEGG: vei:Veis_1656 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
 
     0.486
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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