STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3218KEGG: sat:SYN_01843 hypothetical cytosolic protein. (183 aa)    
Predicted Functional Partners:
Daci_3219
KEGG: mms:mma_2209 hypothetical protein.
 
    
0.822
Daci_3220
PFAM: DnaB domain protein helicase domain protein; KEGG: ajs:Ajs_3212 replicative DNA helicase.
       0.773
Daci_3221
Hypothetical protein; KEGG: aav:Aave_1690 uncharacterized phage-encoded protein.
       0.773
Daci_3222
KEGG: bbr:BB1686 hypothetical protein.
       0.773
Daci_4436
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.
  
     0.545
Daci_3917
KEGG: reu:Reut_B5656 hypothetical protein.
  
     0.533
Daci_1499
KEGG: aav:Aave_0862 histone protein.
  
     0.502
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
     0.492
Daci_4676
Hypothetical protein; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
     0.446
Daci_2896
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4448 TonB-dependent receptor.
  
     0.436
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.