Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3219KEGG: mms:mma_2209 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Daci_3218
KEGG: sat:SYN_01843 hypothetical cytosolic protein.
 
    
0.821
Daci_3220
PFAM: DnaB domain protein helicase domain protein; KEGG: ajs:Ajs_3212 replicative DNA helicase.
     
 0.790
Daci_3221
Hypothetical protein; KEGG: aav:Aave_1690 uncharacterized phage-encoded protein.
       0.784
Daci_3222
KEGG: bbr:BB1686 hypothetical protein.
       0.773
Daci_3917
KEGG: reu:Reut_B5656 hypothetical protein.
  
     0.552
Daci_4508
KEGG: hhe:HH1512 hypothetical protein.
  
     0.530
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
     0.499
Daci_2598
KEGG: oan:Oant_1495 virulence-associated protein.
  
     0.409
Daci_2632
KEGG: oan:Oant_1495 virulence-associated protein.
  
     0.409
Daci_2707
KEGG: swi:Swit_3710 outer membrane efflux protein.
  
     0.406
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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