Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3228KEGG: reu:Reut_B4055 hypothetical protein. (165 aa)    
Predicted Functional Partners:
Daci_3227
KEGG: mms:mma_2189 hypothetical protein.
 
     0.811
Daci_3225
Hypothetical protein.
       0.773
Daci_3226
KEGG: aha:AHA_2039 NinB protein.
       0.773
Daci_3229
PFAM: Lambda NinG family protein; KEGG: hit:NTHI1505 hypothetical protein.
       0.773
Daci_3230
Hypothetical protein.
       0.773
Daci_1311
KEGG: aav:Aave_4148 hypothetical protein.
  
     0.625
Daci_3662
PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.
  
     0.613
Daci_4436
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.
  
     0.589
Daci_2540
KEGG: dar:Daro_1107 hypothetical protein.
  
     0.586
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
  
     0.570
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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