Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Daci_3229PFAM: Lambda NinG family protein; KEGG: hit:NTHI1505 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Daci_3226
KEGG: aha:AHA_2039 NinB protein.
       0.784
Daci_3225
Hypothetical protein.
       0.773
Daci_3227
KEGG: mms:mma_2189 hypothetical protein.
       0.773
Daci_3228
KEGG: reu:Reut_B4055 hypothetical protein.
       0.773
Daci_3230
Hypothetical protein.
       0.773
Daci_3238
KEGG: ecv:APECO1_523 hypothetical protein.
 
     0.734
Daci_3237
KEGG: cko:CKO_01868 hypothetical protein.
 
     0.595
Daci_1916
PFAM: RecT protein; KEGG: bbr:BB2192 phage-related DNA recombination protein.
 
     0.524
Daci_3221
Hypothetical protein; KEGG: aav:Aave_1690 uncharacterized phage-encoded protein.
 
     0.446
Daci_3150
PFAM: periplasmic binding protein; KEGG: pfl:PFL_3623 ferric enterobactin (enterochelin) tranporter.
  
     0.420
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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