STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3237KEGG: cko:CKO_01868 hypothetical protein. (465 aa)    
Predicted Functional Partners:
Daci_3238
KEGG: ecv:APECO1_523 hypothetical protein.
 
     0.951
Daci_3236
PFAM: protein of unknown function DUF264; KEGG: bbr:BB3506 putative phage terminase.
 
     0.832
Daci_3239
Hypothetical protein.
       0.762
Daci_4102
PFAM: Lambda NinG family protein; KEGG: pfl:PFL_3773 NinG protein.
 
     0.721
Daci_1939
PFAM: Lambda NinG family protein; KEGG: pfl:PFL_3773 NinG protein.
 
     0.720
Daci_3235
KEGG: cko:CKO_01870 hypothetical protein.
       0.714
Daci_3234
KEGG: ypk:y2213 hypothetical protein.
       0.638
Daci_3229
PFAM: Lambda NinG family protein; KEGG: hit:NTHI1505 hypothetical protein.
 
     0.595
Daci_3240
KEGG: pap:PSPA7_2407 hypothetical protein.
       0.513
Daci_3241
KEGG: bbr:BB3501 hypothetical protein.
       0.487
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.