Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3247PFAM: tail protein 3; KEGG: pap:PSPA7_2414 phage tail protein. (228 aa)    
Predicted Functional Partners:
Daci_3246
KEGG: smd:Smed_1885 hypothetical protein.
  
    0.632
Daci_3245
KEGG: yen:YE2318 hypothetical protein.
       0.609
Daci_3244
KEGG: bbr:BB3497 hypothetical protein.
       0.607
Daci_2073
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reh:H16_B0184 flp pilus assembly protein CpaB.
  
  
 0.566
Daci_2071
Flp pilus assembly protein ATPase CpaE-like protein; KEGG: bvi:Bcep1808_1488 response regulator receiver protein.
  
  
 0.562
Daci_3248
KEGG: aav:Aave_1780 hypothetical protein.
       0.561
Daci_3249
PFAM: Protein of unknown function DUF1799 phage-related; KEGG: aav:Aave_1781 hypothetical protein.
       0.544
Daci_3250
Hypothetical protein.
       0.449
Daci_2068
PFAM: type II secretion system protein; KEGG: bam:Bamb_1407 type II secretion system protein.
  
  
 0.446
Daci_2069
PFAM: type II secretion system protein; KEGG: reh:H16_B0188 flp pilus assembly protein TadB.
  
  
 0.446
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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