STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3254Prophage antirepressor; PFAM: BRO domain protein; KEGG: cgt:cgR_1918 hypothetical protein. (270 aa)    
Predicted Functional Partners:
Daci_3253
PFAM: KilA domain protein; KEGG: xfa:XF2294 hypothetical protein.
 
     0.815
Daci_1631
PFAM: Terminase; KEGG: bbr:BB1692 terminase.
 
     0.640
Daci_3416
KEGG: xft:PD1724 hypothetical protein.
 
   
 0.629
Daci_3411
SMART: DNA-directed DNA polymerase; KEGG: xfa:XF0683 phage-related DNA polymerase.
 
     0.612
Daci_3407
PFAM: VRR-NUC domain protein; KEGG: cbf:CLI_2427 VRR-NUC domain protein.
 
     0.604
Daci_1632
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bbr:BB1693 portal protein.
 
     0.585
Daci_1633
PFAM: peptidase S14 ClpP; KEGG: bbr:BB1694 phage-related Clp protease; Belongs to the peptidase S14 family.
 
    0.549
Daci_1627
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rsh:Rsph17029_3313 HNH endonuclease.
 
     0.511
Daci_3405
Helicase-like protein; SMART: DEAD-like helicases; KEGG: xfa:XF0680 hypothetical protein.
 
    0.493
Daci_3252
PFAM: Arc domain protein DNA binding domain protein.
       0.457
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.